Auryn simulator

Simulator for spiking neural networks with synaptic plasticity

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manual:neurongroup [2018/02/07 08:33] – [List of Auryn neuron groups] zenkemanual:neurongroup [2018/02/07 08:41] (current) – [List of Auryn neuron models] zenke
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 NeuronGroup is the virtual base class [[http://fzenke.net/auryn/doxygen/current/classauryn_1_1NeuronGroup.html|of all neuron models]] within Auryn. It directly derives from [[SpikingGroup]] and implements important functionality which allows neurons to receive spikes. They are therefore the default target or destination type for [[Connection]] objects. Each non-virtual child of NeuronGroup has to implement the method ''evolve()'' which is called in every time step during simulations and is responsible to "evolve" the neural state variables. NeuronGroup is the virtual base class [[http://fzenke.net/auryn/doxygen/current/classauryn_1_1NeuronGroup.html|of all neuron models]] within Auryn. It directly derives from [[SpikingGroup]] and implements important functionality which allows neurons to receive spikes. They are therefore the default target or destination type for [[Connection]] objects. Each non-virtual child of NeuronGroup has to implement the method ''evolve()'' which is called in every time step during simulations and is responsible to "evolve" the neural state variables.
  
-===== List of Auryn neuron groups =====+===== List of Auryn neuron models =====
  
  
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   * [[AIFGroup]]: Like [[IFGroup]], but with additional spike triggered adaptation current.    * [[AIFGroup]]: Like [[IFGroup]], but with additional spike triggered adaptation current. 
   * [[AIF2Group]]: Like [[AIFGroup]], but two spike triggered adaptation current on different timescales which can be used to mimick power-law adaptation.    * [[AIF2Group]]: Like [[AIFGroup]], but two spike triggered adaptation current on different timescales which can be used to mimick power-law adaptation. 
-  * [[TIFGroup]]: "Tim's Integrate and Fire" neuron model. Simple conductance based integrate and fire model after [[http://www.neuroscience.org/cgi/content/abstract/25/46/10786|Vogels and Abbott (2005)]].+  * [[TIFGroup]]: "Tim's Integrate and Fire" neuron model with absolute refractoriness. Simple conductance based integrate and fire model after [[http://www.neuroscience.org/cgi/content/abstract/25/46/10786|Vogels and Abbott (2005)]].
   * [[CubaIFGroup]]: Current based neuron model with absolute refractoriness as used in [[http://www.neuroscience.org/cgi/content/abstract/25/46/10786|Vogels and Abbott (2005)]].   * [[CubaIFGroup]]: Current based neuron model with absolute refractoriness as used in [[http://www.neuroscience.org/cgi/content/abstract/25/46/10786|Vogels and Abbott (2005)]].
   * [[AdExGroup]]: Adaptive integrate and fire neuron after [[http://www.physiology.org/doi/10.1152/jn.00686.2005|Brette and Gerstner (2005)]].   * [[AdExGroup]]: Adaptive integrate and fire neuron after [[http://www.physiology.org/doi/10.1152/jn.00686.2005|Brette and Gerstner (2005)]].
 +  * [[IzhikevichGroup]]: Implementation of quadratic adaptive Izhikevich neuron after [[http://ieeexplore.ieee.org/document/1257420/|Izhikevich (2003)]]
   * [[IafPscDeltaGroup]]: Current-based integrate and fire neuron with delta current pulses. Similar to NEST implementation with the same name.   * [[IafPscDeltaGroup]]: Current-based integrate and fire neuron with delta current pulses. Similar to NEST implementation with the same name.
   *  [[IafPscExpGroup]]: Same as [[IafPscDeltaGroup]], but with exponentially decaying synaptic current kernel.   *  [[IafPscExpGroup]]: Same as [[IafPscDeltaGroup]], but with exponentially decaying synaptic current kernel.
-  * [[IzhikevichGroup]]: Implementation of quadratic adaptive Izhikevich neuron after [[http://ieeexplore.ieee.org/document/1257420/|Izhikevich (2003)]] 
   * [[NaudGroup]]: Experimental two-compartment neuron model proposed by Richard Naud which can be used for burst multiplexing.   * [[NaudGroup]]: Experimental two-compartment neuron model proposed by Richard Naud which can be used for burst multiplexing.
   * [[SRM0Group]]: Implementation of a probabilistic SRM0 neuron after [[http://neuronaldynamics.epfl.ch|Gerstner et al. (2002, 2014)]].   * [[SRM0Group]]: Implementation of a probabilistic SRM0 neuron after [[http://neuronaldynamics.epfl.ch|Gerstner et al. (2002, 2014)]].
      
manual/neurongroup.1517992414.txt.gz · Last modified: 2018/02/07 08:33 by zenke