====== General ======

  * Compiling Auryn: See [[:quick start]] or [[CompileAuryn]] for instructions.
  * [[Building blocks]] of every simulation
  * [[Simulator structure]]
  * [[Simulation program]] 


===== Neuron models and populations =====

[[Neurons and populations]]

  * [[manual:NeuronGroup]]
    * [[manual:IFGroup]]
    * [[manual:TIFGroup]]
    * [[manual:IF2Group]]
    * [[manual:AdExGroup]]
    * [[manual:IzhikevichGroup]]
    * [[manual:AIFGroup]]
    * [[manual:AIF2Group]]

===== External Input and Stimuli =====

[[External Input and Stimuli]]

  * [[manual:PoissonGroup]]
  * [[manual:FileInputGroup]]
  * [[manual:StimulusGroup]]


===== Connections and plasticity =====

[[Connections and plasticity]]

  * [[manual:SparseConnection]]
  * [[manual:STPConnection]]
  * [[manual:TripletConnection]]
  * [[manual:ZynapseConnection]]

===== Monitoring and Readout =====

[[Monitoring and Readout]]

  * [[manual:Monitor]]
  * [[manual:SpikeMonitor]]
  * [[manual:StateMonitor]]
  * [[manual:PopulationRateMonitor]]
  * [[manual:PatternMonitor]]
  * [[manual:WeightMonitor]]

Most monitor instances write their output to an individual file. Many file formats are human readable, while others are binary. See [[IO File Formats]] for a more complete overview of typical file formats. 


===== Runtime Exceptions, Warning and Error Messages =====

See [[AurynExceptions]] and [[Warning and Error Messages]]