Auryn simulator

Simulator for spiking neural networks with synaptic plasticity

User Tools

Site Tools


manual:aube

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Last revisionBoth sides next revision
manual:aube [2016/06/16 17:05] – sentence structure zenkemanual:aube [2017/04/18 16:21] – [Auryn Binary Extract (aube)] zenke
Line 1: Line 1:
 ====== Auryn Binary Extract (aube) ====== ====== Auryn Binary Extract (aube) ======
  
-This command line tool extracts spike information from [[spk|binary spike raster files]] and converts them in the more digestible [[ras]] format. Binary files provide a significant simulation speed advantage over the old [[ras]] file format and allow random access to spike information. ''aube'' is capable of efficiently merging multiple [[spk]] files and export select temporal ranges from it to the more digestible [[ras]] format. It can be efficiently incorporated into Linux command-line and pipe based work flow and works flawlessly with [[gnuplot]]. The tool included with Auryn releases (ver. >0.6.1) and can be found in the ''tools'' directory. +This command line tool extracts spike information from [[spk|binary spike raster files]] and converts them in the more digestible [[ras]] format. Binary files provide a significant simulation speed advantage over the old [[ras]] file format, take less disk space and allow random access to temporal chunks of spike information. ''aube'' is capable of efficiently merging the multiple [[spk]] files generated by parallel simulations and exports only select temporal ranges from it. It can be efficiently incorporated into Linux command-line and pipe based work flow and works flawlessly with [[gnuplot]]. The tool included with Auryn releases (ver. >0.6.1) and can be found in the ''tools'' directory. For users doing their analysis in Python, the [[python tools]] offer an alternative to decoding spk files. These tools allow to directly import binary spiking data into Python without the detour via aube.
- +
 ===== Compiling/Installing aube ===== ===== Compiling/Installing aube =====
 ''aube'' is [[manual:compileauryn|compiled]] automatically with the rest of Auryn and located in the tools directory. It can be installed to your systems default install location (e.g. ''/usr/local/bin'') with the help of ''make install''. Otherwise you will have to ensure yourself that ''aube'' is in the PATH for the following examples to work. ''aube'' is [[manual:compileauryn|compiled]] automatically with the rest of Auryn and located in the tools directory. It can be installed to your systems default install location (e.g. ''/usr/local/bin'') with the help of ''make install''. Otherwise you will have to ensure yourself that ''aube'' is in the PATH for the following examples to work.
manual/aube.txt · Last modified: 2017/04/18 16:22 by zenke