Auryn simulator  v0.8.1-206-gb56e451
Plastic Spiking Neural Network Simulator
auryn.h
Go to the documentation of this file.
1 /*
2 * Copyright 2014-2018 Friedemann Zenke
3 *
4 * This file is part of Auryn, a simulation package for plastic
5 * spiking neural networks.
6 *
7 * Auryn is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * Auryn is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with Auryn. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * If you are using Auryn or parts of it for your work please cite:
21 * Zenke, F. and Gerstner, W., 2014. Limits to high-speed simulations
22 * of spiking neural networks using general-purpose computers.
23 * Front Neuroinform 8, 76. doi: 10.3389/fninf.2014.00076
24 */
25 
26 #ifndef AURYN_H_
27 #define AURYN_H_
28 
29 #include <iostream>
30 #include <iomanip>
31 #include <stdlib.h>
32 #include <string>
33 
34 #include <boost/program_options.hpp>
35 
36 #ifdef AURYN_CODE_USE_MPI
37 #include <boost/mpi/environment.hpp>
38 #include <boost/mpi/communicator.hpp>
39 #include <boost/mpi.hpp>
40 #endif // AURYN_CODE_USE_MPI
41 
42 // Core simulator definitions
43 #include "auryn/auryn_global.h"
44 #include "auryn/auryn_definitions.h"
45 #include "auryn/AurynVector.h"
46 #include "auryn/AurynDelayVector.h"
47 #include "auryn/System.h"
48 #include "auryn/Logger.h"
49 #include "auryn/SpikeDelay.h"
50 #ifdef AURYN_CODE_USE_MPI
51 #include "auryn/SyncBuffer.h"
52 #endif // AURYN_CODE_USE_MPI
53 
54 
55 // Trace definitions
56 #include "auryn/LinearTrace.h"
57 #include "auryn/EulerTrace.h"
58 
59 // Connection definitions
60 #include "auryn/Connection.h"
61 #include "auryn/SparseConnection.h"
62 #include "auryn/DelayConnection.h"
63 #include "auryn/RateModulatedConnection.h"
64 #include "auryn/STDPConnection.h"
65 #include "auryn/PairInteractionConnection.h"
66 #include "auryn/STDPwdConnection.h"
67 #include "auryn/SymmetricSTDPConnection.h"
68 #include "auryn/STPConnection.h"
69 #include "auryn/ABSConnection.h"
70 #include "auryn/DuplexConnection.h"
71 #include "auryn/TripletConnection.h"
72 #include "auryn/LPTripletConnection.h"
73 #include "auryn/TripletDecayConnection.h"
74 #include "auryn/TripletScalingConnection.h"
75 #include "auryn/MinimalTripletConnection.h"
76 #include "auryn/IdentityConnection.h"
77 #include "auryn/AllToAllConnection.h"
78 
79 // Spiking and input group definitions
80 #include "auryn/SpikingGroup.h"
81 #include "auryn/NeuronGroup.h"
82 #include "auryn/PoissonGroup.h"
83 #include "auryn/PoissonSpikeInjector.h"
84 #include "auryn/FileInputGroup.h"
85 #include "auryn/FileModulatedPoissonGroup.h"
86 #include "auryn/ParrotGroup.h"
87 #include "auryn/StimulusGroup.h"
88 #include "auryn/SpikeTimingStimGroup.h"
89 #include "auryn/ProfilePoissonGroup.h"
90 #include "auryn/StructuredPoissonGroup.h"
91 #include "auryn/CorrelatedPoissonGroup.h"
92 #include "auryn/InputChannelGroup.h"
93 #include "auryn/MovingBumpGroup.h"
94 #include "auryn/AuditoryBeepGroup.h"
95 
96 // NeuronGroups
97 #include "auryn/IFGroup.h"
98 #include "auryn/CubaIFGroup.h"
99 #include "auryn/TIFGroup.h"
100 #include "auryn/AIFGroup.h"
101 #include "auryn/AIF2Group.h"
102 #include "auryn/AdExGroup.h"
103 #include "auryn/SRM0Group.h"
104 #include "auryn/IafPscDeltaGroup.h"
105 #include "auryn/IafPscExpGroup.h"
106 #include "auryn/IzhikevichGroup.h"
107 #include "auryn/NaudGroup.h"
108 
109 // SynapseModel
110 #include "auryn/SynapseModel.h"
111 #include "auryn/ExpCubaSynapse.h"
112 #include "auryn/ExpCobaSynapse.h"
113 #include "auryn/LinearComboSynapse.h"
114 
115 // Checker definitions
116 #include "auryn/Checker.h"
117 #include "auryn/RateChecker.h"
118 #include "auryn/WeightChecker.h"
119 
120 // Monitor and stimulator definitions
121 #include "auryn/Device.h"
122 #include "auryn/Monitor.h"
123 #include "auryn/VoltageMonitor.h"
124 #include "auryn/VoltageClampMonitor.h"
125 #include "auryn/SpikeMonitor.h"
126 #include "auryn/BinarySpikeMonitor.h"
127 #include "auryn/BinaryStateMonitor.h"
128 #include "auryn/DelayedSpikeMonitor.h"
129 #include "auryn/RealTimeMonitor.h"
130 #include "auryn/RateMonitor.h"
131 #include "auryn/PopulationRateMonitor.h"
132 #include "auryn/BurstRateMonitor.h"
133 #include "auryn/StateMonitor.h"
134 #include "auryn/WeightSumMonitor.h"
135 #include "auryn/PatternMonitor.h"
136 #include "auryn/WeightPatternMonitor.h"
137 #include "auryn/WeightStatsMonitor.h"
138 #include "auryn/WeightMonitor.h"
139 #include "auryn/WeightMatrixMonitor.h"
140 #include "auryn/PoissonStimulator.h"
141 #include "auryn/NormalStimulator.h"
142 #include "auryn/PatternStimulator.h"
143 #include "auryn/CurrentInjector.h"
144 
145 
146 #endif /*AURYN_H__*/
auryn_global.h
auryn_definitions.h
Generated on Tue Feb 19 2019 09:22:42 for Auryn simulator by   doxygen 1.8.13