NeuronGroup.h

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/* 
* Copyright 2014-2018 Friedemann Zenke
*
* This file is part of Auryn, a simulation package for plastic
* spiking neural networks.
* 
* Auryn is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
* 
* Auryn is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
* 
* You should have received a copy of the GNU General Public License
* along with Auryn.  If not, see <http://www.gnu.org/licenses/>.
*
* If you are using Auryn or parts of it for your work please cite:
* Zenke, F. and Gerstner, W., 2014. Limits to high-speed simulations 
* of spiking neural networks using general-purpose computers. 
* Front Neuroinform 8, 76. doi: 10.3389/fninf.2014.00076
*/

#ifndef NEURONGROUP_H_
#define NEURONGROUP_H_

#include "auryn_definitions.h"
#include "AurynVector.h"
#include "SpikingGroup.h"

#include <map>

#include <fstream>
#include <sstream>

namespace auryn {

class NeuronGroup : public SpikingGroup
{
protected:


        AurynStateVector * default_exc_target_state;
        AurynStateVector * default_inh_target_state;

        void init();

        void free();




public:
        AurynStateVector * mem ;
        AurynStateVector * g_ampa ;
        AurynStateVector * g_gaba ;
        AurynStateVector * g_nmda ;

        AurynStateVector * thr ;

        NeuronGroup( NeuronID n, NodeDistributionMode mode=AUTO );

        NeuronGroup( NeuronID n, double loadmultiplier, NeuronID total );

        virtual ~NeuronGroup();

        virtual void clear() = 0;

        void set_state(std::string name, AurynState val);

        void set_state(std::string name, NeuronID i, AurynState val);

        virtual AurynStateVector * get_default_exc_target();

        virtual AurynStateVector * get_default_inh_target();


        void random_mem(AurynState mean=-60e-3, AurynState sigma=5e-3);

        virtual void init_state();

        void safe_tadd(NeuronID id, AurynWeight amount, TransmitterType t=GLUT);
        void tadd(NeuronID id, AurynWeight amount, TransmitterType t=GLUT);

        void tadd(AurynStateVector * state, NeuronID id, AurynWeight amount);

};

}

#endif /*NEURONGROUP_H_*/